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1

CBD: a biomarker database for colorectal cancer

Zhang, Xueli, Sun, Xiao-Feng, Cao, Yang, Ye, Benchen, Peng, Qiliang, Liu, Xingyun, Shen, Bairong, Zhang, Hong

Journal:

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

2

NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database

Yang, Yang, Xu, Chen, Liu, Xingyun, Xu, Chao, Zhang, Yuanyuan, Shen, Li, Vihinen, Mauno, Shen, Bairong

Journal:

Year:

2018

Language:

english

File:

PDF, 580 KB

english, 2018

3

Biomedical text mining and its applications in cancer research

Zhu, Fei, Patumcharoenpol, Preecha, Zhang, Cheng, Yang, Yang, Chan, Jonathan, Meechai, Asawin, Vongsangnak, Wanwipa, Shen, Bairong

Journal:

Journal of Biomedical Informatics

Year:

2013

Language:

english

File:

PDF, 861 KB

english, 2013

4

Modeling and Simulation Studies of Complex Biological Systems for Precision Medicine and Healthcare

Shen, Bairong, Jiang, Xiaoqian, Zhao, Xingming

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 6 KB

english, 2019

5

Genome wide analysis of pathogenic SH2 domain mutations

Ilkka Lappalainen, Janita Thusberg, Bairong Shen, Mauno Vihinen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 465 KB

english, 2008

6

The construction of an amino acid network for understanding protein structure and function

Yan, Wenying, Zhou, Jianhong, Sun, Maomin, Chen, Jiajia, Hu, Guang, Shen, Bairong

Journal:

Year:

2014

Language:

english

File:

PDF, 602 KB

english, 2014

7

Integrative analysis reveals disease-associated genes and biomarkers for prostate cancer progression

Li, Yin, Vongsangnak, Wanwipa, Chen, Luonan, Shen, Bairong

Journal:

BMC Medical Genomics

Year:

2014

Language:

english

File:

PDF, 4.22 MB

english, 2014

8

Protein interaction network constructing based on text mining and reinforcement learning with application to prostate cancer

Liu, Quan, Zhang, Xiaofang, Zhu, Fei, Shen, Bairong

Journal:

IET Systems Biology

Year:

2015

Language:

english

File:

PDF, 429 KB

english, 2015

9

A Systems Biology Perspective on Rational Design of Peptide Vaccine Against Virus Infections

Chen, Jiajia, Wang, Ying, Guo, Deyin, Shen, Bairong

Journal:

Current Topics in Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 136 KB

english, 2012

10

PON-Sol: prediction of effects of amino acid substitutions on protein solubility

Yang, Yang, Niroula, Abhishek, Shen, Bairong, Vihinen, Mauno

Journal:

Year:

2016

Language:

english

File:

PDF, 169 KB

english, 2016

11

Synthesis, aggregation-enhanced emission, polymorphism and piezochromism of TPE-cored foldamers with through-space conjugation

Zhuang, Zeyan, Shen, Pingchuan, Ding, Siyang, Luo, Wenwen, He, Bairong, Nie, Han, Wang, Bohan, Huang, Tianbai, Hu, Rongrong, Qin, Anjun, Zhao, Zujin, Tang, Ben Zhong

Journal:

Chemical Communications

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

12

[Advances in Experimental Medicine and Biology] Translational Biomedical Informatics Volume 939 ||

Shen, Bairong, Tang, Haixu, Jiang, Xiaoqian

Year:

2016

Language:

english

File:

PDF, 6.28 MB

english, 2016

13

[Advances in Experimental Medicine and Biology] Translational Biomedical Informatics Volume 939 || Metagenomics and Single-Cell Omics Data Analysis for Human Microbiome Research

Shen, Bairong, Tang, Haixu, Jiang, Xiaoqian

Year:

2016

Language:

english

File:

PDF, 437 KB

english, 2016

14

[Advances in Experimental Medicine and Biology] Translational Informatics in Smart Healthcare Volume 1005 || Interactions Between Genetics, Lifestyle, and Environmental Factors for Healthcare

Year:

2017

Language:

english

File:

PDF, 502 KB

english, 2017

15

[Advances in Experimental Medicine and Biology] Healthcare and Big Data Management Volume 1028 || Entropy for the Complexity of Physiological Signal Dynamics

Year:

2017

Language:

english

File:

PDF, 230 KB

english, 2017

16

[Advances in Experimental Medicine and Biology] Translational Informatics in Smart Healthcare Volume 1005 ||

Year:

2017

Language:

english

File:

PDF, 4.67 MB

english, 2017

17

MicroRNA Alterations for Diagnosis, Prognosis, and Treatment of Osteoporosis: A Comprehensive Review and Computational Functional Survey

Hu, Hai, He, Xiaodi, Zhang, Yazhong, Wu, Rongrong, Chen, Jiajia, Lin, Yuxin, Shen, Bairong

Journal:

Frontiers in Genetics

Year:

2020

Language:

english

File:

PDF, 2.87 MB

english, 2020

18

Identifying novel prostate cancer associated pathways based on integrative microarray data analysis

Ying Wang, Jiajia Chen, Qinghui Li, Haiyun Wang, Ganqiang Liu, Qing Jing, Bairong Shen

Journal:

Computational Biology and Chemistry

Year:

2011

Language:

english

File:

PDF, 908 KB

english, 2011

19

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern

Binhua Tang, Xuechen Wu, Ge Tan, Su-Shing Chen, Qing Jing, Bairong Shen

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 2.66 MB

english, 2010

20

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs

Bingchuan Liu, Jiajia Chen, Bairong Shen

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 438 KB

english, 2011

21

Roles of surface and subsurface oxygen in the dehydrogenation of methanol on silver surface

Qiang Sun, Bairong Shen, Kangnian Fan, Jingfa Deng

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 300 KB

english, 2000

22

Ab initio study on the adsorption and dissociation process of methanol on a silver surface

Kangnian Fan, Bairong Shen, Wenning Wang, Jingfa Deng

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1998

Language:

english

File:

PDF, 378 KB

english, 1998

23

Ab initio study on the adsorption and oxidation of HCHO with Ag2 cluster

Bairong Shen, Kangnian Fan, Wenning Wang, Jingfa Deng

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1999

Language:

english

File:

PDF, 77 KB

english, 1999

24

Systematic investigation of global coordination among mRNA and protein in cellular society

Haiyun Wang, Qi Wang, Utz J Pape, Bairong Shen, Jianhua Huang, Bin Wu, Xia Li

Journal:

Year:

2010

Language:

english

File:

PDF, 951 KB

english, 2010

25

The preservation of bidirectional promoter architecture in eukaryotes: what is the driving force?

Chao Xu,Jiajia Chen,Bairong Shen

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 409 KB

english, 2012

26

NF-Y influences directionality of transcription from the bidirectional Mrps12/Sarsm promoter in both mouse and human cells

Ernesto Zanotto, Antti Häkkinen, Gabriel Teku, Bairong Shen, Andre S. Ribeiro, Howard T. Jacobs

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2009

Language:

english

File:

PDF, 743 KB

english, 2009

27

Effect of halogen atoms (Cl, Br, I) on the structure and catalytic behavior of Ag(111) surface: a density functional theory study

Bairong Shen, Zhigang Fang, Kangnian Fan, Jingfa Deng

Journal:

Surface Science

Year:

2000

Language:

english

File:

PDF, 214 KB

english, 2000

28

BOC-MP study on the mechanism of partial oxidation of CH3OH to HCHO over a silver surface and the promoting effect of halogen to the catalyst

Bairong Shen, Xiaoyu Chen, Kangnian Fan, Jing-Fa Deng

Journal:

Surface Science

Year:

1998

Language:

english

File:

PDF, 150 KB

english, 1998

29

1612 MICRORNA EXPRESSION ANALYSIS REVEALS SIGNIFICANT BIOLOGICAL PATHWAYS IN HUMAN PROSTATE TUMOR

Shen, Bairong, Tang, Yifei

Journal:

The Journal of Urology

Year:

2011

Language:

english

File:

PDF, 56 KB

english, 2011

30

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Zhang, Wenyu, Chen, Jiajia, Yang, Yang, Tang, Yifei, Shang, Jing, Shen, Bairong, Jordan, I. King

Journal:

Year:

2011

Language:

english

File:

PDF, 2.22 MB

english, 2011

31

Structure-based prediction of the effects of a missense variant on protein stability

Yang Yang, Biao Chen, Ge Tan, Mauno Vihinen, Bairong Shen

Journal:

Year:

2013

Language:

english

File:

PDF, 392 KB

english, 2013

32

SVR_CAF: An integrated score function for detecting native protein structures among decoys

Zhou, Jianhong, Yan, Wenying, Hu, Guang, Shen, Bairong

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 782 KB

english, 2014

33

Post genome-wide association studies functional characterization of prostate cancer risk loci

Jiang, Junfeng, Cui, Weirong, Vongsangnak, Wanwipa, Hu, Guang, Shen, Bairong

Journal:

Year:

2013

Language:

english

File:

PDF, 675 KB

english, 2013

34

Identifying novel glioma associated pathways based on systems biology level meta-analysis

Hu, Yangfan, Li, Jinquan, Yan, Wenying, Chen, Jiajia, Li, Yin, Hu, Guang, Shen, Bairong

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

35

InCoB2013 introduces Systems Biology as a major conference theme

Schönbach, Christian, Shen, Bairong, Tan, Tin, Ranganathan, Shoba

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 104 KB

english, 2013

36

Amino acid contact energy networks impact protein structure and evolution

Yan, Wenying, Sun, Maomin, Hu, Guang, Zhou, Jianhong, Zhang, Wenyu, Chen, Jiajia, Chen, Biao, Shen, Bairong

Journal:

Journal of Theoretical Biology

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

37

[Translational Bioinformatics] Bioinformatics for Diagnosis, Prognosis and Treatment of Complex Diseases Volume 4 ||

Year:

2013

Language:

english

File:

PDF, 4.10 MB

english, 2013

38

[Translational Bioinformatics] Bioinformatics for Diagnosis, Prognosis and Treatment of Complex Diseases Volume 4 || Systems Biology Studies of Gene Network and Cell Signaling Pathway in Cancer Research

Year:

2013

Language:

english

File:

PDF, 489 KB

english, 2013

39

Residue interaction network analysis of Dronpa and a DNA clamp

Hu, Guang, Yan, Wenying, Zhou, Jianhong, Shen, Bairong

Journal:

Journal of Theoretical Biology

Year:

2014

Language:

english

File:

PDF, 4.47 MB

english, 2014

40

Genome-scale analysis of the metabolic networks of oleaginous Zygomycete fungi

Vongsangnak, Wanwipa, Ruenwai, Rawisara, Tang, Xin, Hu, Xinjie, Zhang, Hao, Shen, Bairong, Song, Yuanda, Laoteng, Kobkul

Journal:

Year:

2013

Language:

english

File:

PDF, 977 KB

english, 2013

41

Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer

Zhang, Wenyu, Zang, Jin, Jing, Xinhua, Sun, Zhandong, Yan, Wenying, Yang, Dongrong, Shen, Bairong, Guo, Feng

Journal:

Journal of Translational Medicine

Year:

2014

Language:

english

File:

PDF, 461 KB

english, 2014

42

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - HongKong, China (2010.12.18-2010.12.18)] 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Traditional Chinese Medicine data mining: Associating clinical cancer case studies with Traditional Chinese Medicine therapies

Chen, Sushing, Shen, Bairong, Chen, Jiajia, Yang, Yang, Li, Yuan

Year:

2010

Language:

english

File:

PDF, 325 KB

english, 2010

43

[IEEE 2012 IEEE 6th International Conference on Systems Biology (ISB) - Xian, China (2012.08.18-2012.08.20)] 2012 IEEE 6th International Conference on Systems Biology (ISB) - An integrative framework for identifying consistent microRNA expression signatures associated with clear cell renal cell carcinoma

Chen, Jiajia, Zhang, Daqing, Zhang, Wenyu, Tang, Yifei, Guo, Lingchuan, Shen, Bairong

Year:

2012

Language:

english

File:

PDF, 863 KB

english, 2012

44

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - MicroRNA expression analysis reveals significant biological pathways in human prostate cancer

Yifei Tang,, Chen, Jiajia, Cheng Luo,, Kaipia, Antti, Shen, Bairong

Year:

2011

Language:

english

File:

PDF, 1.17 MB

english, 2011

45

[IEEE 2012 IEEE 6th International Conference on Systems Biology (ISB) - Xian, China (2012.08.18-2012.08.20)] 2012 IEEE 6th International Conference on Systems Biology (ISB) - Identifying novel glioma associated pathways based on integrated ‘omics’ data

Hu, Yangfan, Li, Jinquan, Chen, Jiajia, Hu, Guang, Shen, Bairong

Year:

2012

Language:

english

File:

PDF, 837 KB

english, 2012

46

[IEEE 2009 2nd International Conference on Biomedical Engineering and Informatics - Tianjin, China (2009.10.17-2009.10.19)] 2009 2nd International Conference on Biomedical Engineering and Informatics - Clinical Information Driven Ensemble Clustering for Inferring Robust Tumor Subtypes

Wang, Haiyun, Ding, Min, Li, Xia, Shen, Bairong, Li, Xia

Year:

2009

Language:

english

File:

PDF, 321 KB

english, 2009

47

Virtual screening and biological evaluation of novel small molecular inhibitors against protein arginine methyltransferase 1 (PRMT1)

Xie, Yiqian, Zhou, Ran, Lian, Fulin, Liu, Yan, Chen, Limin, Shi, Zhe, Zhang, Naixia, Zheng, Mingyue, Shen, Bairong, Jiang, Hualiang, Liang, Zhongjie, Luo, Cheng

Journal:

Organic & Biomolecular Chemistry

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

48

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - The preservation of bidirectional promoter architecture in Eukaryotes - Functional or co-regulation constraint?

Chao Xu,, Jiajia Chen,, Shen, Bairong

Year:

2011

Language:

english

File:

PDF, 449 KB

english, 2011

49

[IEEE 2008 2nd International Conference on Bioinformatics and Biomedical Engineering - Shanghai, China (2008.05.16-2008.05.18)] 2008 2nd International Conference on Bioinformatics and Biomedical Engineering - In Silico Identification & Adaptive Control of the Motif in the Mammalian G1/S Cell Cycle Pathway

Tang, Binhua, Liu, Jiajun, He, Li, Jing, Qing, Shen, Bairong

Year:

2008

Language:

english

File:

PDF, 155 KB

english, 2008

50

[IEEE amp; Instruments. ICEMI 2007 - Xi'an (2007.08.16-2007.07.18)] 2007 8th International Conference on Electronic Measurement and Instruments - ALERT NOTICE: Stepping Optimal Controlling of a Rucklidge-like Chaotic System

Binhua, Tang, Bairong, Shen, Li He,, Zhi, Yang

Year:

2007

File:

PDF, 495 KB

2007